Archive for the 'Open Access' Category



The Scientist : Yale dumps BioMed Central

The Scientist : Yale dumps BioMed Central:

Yale University’s science and medicine libraries have decided to discontinue their membership to BioMed Central (BMC), an open access publishing company, citing skyrocketing membership costs in a public statement issued last Friday (Aug 3).

The Cushing/Whitney Medical and Kline Science Libraries at Yale have been members of BMC since 2003. The libraries have covered the costs of membership on behalf of the university and its researchers but can no longer absorb membership fees that have grown in excess of $30,000 over the past year, Kenny Marone, director of the medical library, told The Scientist.

“The library paying for faculty publishing has not been supported by the institution, we haven’t been given additional money for this,” Marone said. “If we have to make cuts this becomes one of the first things we cut.” Marone added that while the libraries supported open access publishing, some of the costs should be absorbed by the individual researchers, research funders or the readers who benefit from the published articles.

Old news now, I know. But I was struck by the gleefulness with which the story was picked up by those with an axe to grind on open access. Perhaps unsurprising given the polarisation of the debate, but you don’t see journal non-renewals reported quite so closely – for example, it made one of the headlines in the STM News for July/August

PS: The first online reader of The Scientist to comment on the article has really taken the public disclosure agenda to heart, complaining that it should have made it clearer that BMC and The Scientist are owned by the same group, else “[t]here could be a bit of bias…” Well, if “Yale dumps BioMed Central” is the friendly headline, I shudder to think what the enemies would say!

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Beauty of statistics

An interesting and potential inspiring post on O’Reilly Radar on the Istanbul Declaration signed at the recent OECD World Forum on Statistics, Knowledge and Policy which called on governments to make their statistical data freely available online as a “public good”:

The declaration also calls for new measures of happiness and well-being, going beyond just economic output and GDP. This requires the creation of new tools, which the OECD envisions will be “wiki for progress.” Expect to hear more about these initiatives soon.

This data combined with new tools like Swivel and MappingWorlds is powerful. Previously this information was hard to acquire and the tools to analyze it were expensive and hard to use, which limited it’s usefulness. Now, regular people can access, visualize and discuss this data.

I’m also planning to explore how these new kinds of tools (other examples are ManyEyes, and Gapminder (now owned by Google)) could be used in STM publishing and would be interested to hear about any ideas or initiatives in this direction.

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Ouch – Springer editorial board member publicly resigns

Peter Murray-Rust, a noted Open Access advocate and online publishing innovator in chemistry, has publicly resigned on his blog from the editorial board of Springer’s journal Journal of Molecular Modeling over Springer’s apparent handling of its Open Choice programme.

Under Springer’s Open Choice, authors can voluntarily have their paper made open access even within an otherwise subscription-based journal by paying a fee of $3000 to the publisher. All large publishers have such schemes, primarily as a response to the introduction of policies by research funders (such as the National Institutes of Health in the US and the Wellcome Trust in the UK) requiring authors to deposit a version of their accepted articles in a public archive.

Springer had gone rather farther than most, however, with the appointment in 2005 of Jan Velterop as Director of Open Access, who had made public statements about Springer’s commitment to real open access, e.g. with the use of a licence based on the Creative Commons licence.

Murray-Rust thought about publishing an article under Open Choice and decided to look at some existing examples to see what he got for his money. To his surprise, the Open Choice articles he found were marked “© Springer” and had links to the CCC Rightslink online permissions system.

It’s not entirely clear whether Murray-Rust attempted to discuss this with Springer or whether he immediately decided to resign[Update: see comment from Peter Murray-Rust below] , but whichever he couched his resignation in very robust language:

…it is absolutely clear that Springer has no intention of actually making this article Open Access even by their own “Your Research. Your Choice” promise, let alone the BOAI.

The best that can be said is that Springer don’t care a green fig about Open Choice – they clearly have made no effort to implement it with the care that is required. That’s certainly the impression that most of the large publishers give – they want to be able to say “we offered this choice but hardly anyone wanted to take it up”.

If Springer care about it they should give all the authors their money back. I think they have destroyed the idea of Open Choice for the whole publishing industry. It doesn’t matter what the details were – they have blatantly failed to deliver “full open access” and they have taken a lot of money for it.

Springer’s Velterop was left struggling to respond in a comment to Murray-Rust’s blog posting. He pointed out that

*any* copyright holder can make an article open access, and this *includes* the publisher

Technically true, but clearly not what authors would expect from reading the Open Choice rubric.

Velterop went on to blame the copyright line and Rightslink buttons on inflexibilities in the Springer production system and flaws in their Rightslink implementation, which is hardly great PR for the publisher — the “cock-up rather than conspiracy” defence.

He also pointed out that Springer had made some articles Open Choice without author payments to help measure usage (there presumably not being enough take-up by authors to produce any valid statistics on differential usage?), and that Springer had made some articles retrospectively Open Choice by agreements with various Dutch institutions.

Although Murray-Rust comes across as hasty in not securing an explanation from Springer before going public, the PR damage to Springer is surely greater. Springer’s Open Choice programme has been in place longer than most publishers, so it’s not unreasonable to expect they would have sorted out the associated production issues before now. They are also guilty of poorly managing expectations and scrambling to give expectations after the fact, rather than say including these details in a FAQ section on the Open Choice pages.

Update 2: Matt Hodgkinson has an interesting post about this – Open Choice takes a beating – on his Journalology blog.

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Update/correction on Nature Precedings statistics

Oops. In my note about the launch of Nature Precedings last week, I said incorrectly there were 64 submissions on the launch date and gave the breakdown by subject category.

This made a rather elementary error – my numbers assumed that each submission was in only one subject category, whereas course many have multiple categories.

Looking at the site a week later, there appear to be 43 submissions, split roughly 40:60 between manuscripts (17) and poster/presentations (26).

Bioinformatics is still by far the most popular single category, though.

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Nature Precedings goes live

I noted the launch announcement of Nature’s Precedings a few days ago.

The site has now gone live with a total of 64 submissions. Timo Hannay’s announcement is here and the press release here.

The site is very nicely implemented, with all the Web2.0 features we have come to expect from Nature Publishing Group, including tagging (documents and people), voting for articles, and open discussion on articles, etc.

Perhaps not surprisingly, by far the largest single subject category is Bioinformatics, with 20 documents. Biotechnology, Evolution & Ecology, and Molecular Cell Biology each have 9, while other topics have only a couple of documents. It will be interesting to see whether this distribution just reflects the make-up of the beta testers, or whether it will hold as the site attracts more submissions.

The list of partners has also been released: the British Library, the European Bioinformatics Institute, Science Commons, and the Wellcome Trust. Nature hopes the stature of the partners will allay fears about Nature’s plans for possible future control of the content.

The site differs from some of the earlier preprint sites (like arXiv in physics) in that it accepts powerpoint presentations as well as journal article preprints, e.g. this interesting presentation: Open Notebook Science Using Blogs and Wikis.

UPDATE/CORRECTION: There’s a mistake in these figures, see here for the correction

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Peer review developments

An article in the first issue of Open Medicine, a new open access journal , Peer review in open access scientific journals by Dr Falagas (via Journalogy) discussed development in peer review from an open access perspective:

Open access publications should be at the forefront in experimenting with strategies to foster what might be called an increasingly open science. As the open access movement blossoms, its supporters should continue to critically evaluate the parallel development of openness and transparency in the peer review process.

…while all manner of electronic journals are experimenting with reader input on published material, little is known about the scientific value of post-publication review in the modern era of open access publishing

Peer review is a surprisingly active area for discussion and experimentation, given that has been the standard approach to selecting material for publication in scholarly journals for about 300 years. (For instance the American Medical Association runs an four-yearly International Congress on Peer Review and Biomedical Publication.) There are two reasons for this:

  • dissatisfaction with the present system: it has been described as unreliable, unfair, unstandardised, untested, open to bias, failing to validate or authenticate, stiffling innovation, perpetuating the status quo, rewarding the prominent, expensive and slow
  • because we can: new online publishing and social networking technologies make it easier to test new ideas

Some example of new approaches to peer review:

  1. An early online experiment with open reviewing tool place at the (now defunct) journal Electronic Transactions on Artificial Intelligence. The peer review process consisted of the following. All submitted articles within scope are immediately posted on the Web for a 90 day discussion period. At end of “review” period, authors given option to revise; revised article sent out for “pass-fail” review“. If ”pass,“ article is published.
  2. Nature’s open peer review trial: authors were invited to have their submitted manuscripts placed on an open website where anyone could review and comment on them. About 5% of authors agreed to participate, and the displayed papers got a healthy level of interest and traffic, but the trial was unsuccessful because the quantity (and quality)
  3. In PLosOne, the new OA ”journal of everything“ from PLoS, articles are assessed by a member of the editorial board for purely for technical correctness (roughly, answering the question, is this science?). Once accepted, papers are made available for community-based open peer review involving online annotation, discussion, and rating.
  4. At Biology Direct (a BioMedCentral journal), their novel system of peer review ”will include making the author responsible for obtaining reviewers’ reports, via the journal’s Editorial Board; making the peer review process open rather than anonymous; and publishing the reviewers’ reports along with the articles, thus increasing both the responsibility and the reward of the referees and eliminating sources of abuse in the refereeing process“

Some useful resources:

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Nature Precedings – a preprint server for biomedicine

Nature has announced the launch of Nature Precedings. From the editorial

will enable researchers to share, discuss and cite their early findings. It provides a lightly moderated and relatively informal channel for scientists to disseminate information, especially recent experimental results and emerging conclusions. In this sense, it is designed to complement traditional peer-reviewed journals, allowing researchers to make informal communications such as conference papers or presentations more widely available and enabling them to be formally cited. This, in turn, allows them to solicit community feedback and establish priority over their results or ideas.

A bioinformatics resesarcher, Pedro Beltrão, who has been participating in the beta testing, has a posting about it here. Extracts:

I have been participating in the beta for some months now and as it is mentioned in the editorial it will be openly available starting next week. All documents are citable (have DOIs), are not peer-reviewed (in the formal sense) and are archived under a creative commons license (derivatives allowed). The site has the community features (tagging/commenting/rating/RSS feeds) that you would expect and that will hopefully allow for requesting and providing comments on early findings. In summary an nicer version of ArXive for biomedical research

A framework for open science (in biology) can now go from blogs/wikis to pre-print server to peer-reviewed journals. Many ideas might die along the way and many collaborations might form by connecting early findings in an unexpected way.

Despite the long-time success of subject-based preprint servers in other disciplines (arXiv in physics, RePEc in economics, etc.), there has been very little interest to date, and indeed some active hostility[1], to the idea in biomedical research. I would guess that it is much more likely to attract interest from areas like bioinformatics than in medical research (where publishing un-refereed material is particularly problematic). If it does succeed (and presumably Nature has at least sufficient positive feedback from the beta trials to think it worth launching publicly), it would also be the first preprint server started and run by a commercial organisation, though Nature do say:

We anticipate that the content will be mirrored by academic partner organizations, several of whom have been involved with us in developing this service. As well as allowing it to become incorporated into the substantial information hubs already provided by these organizations, this federated approach will also help to ensure the long-term availability of the content — and act as a practical guarantee of the Nature Publishing Group’s pledge not to charge readers for access.

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[1] e.g. see Rightscom’s 2005 report for JISC, Disciplinary Differences and Needs

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JISC Digital Repositories conference

The JISC conference Digital Repositories: Dealing with the Digital Deluge took place in Manchester earlier this week, and JISC has now provided a summary here.

The first plenary talk by Andy Powell of Eduserve reviewed the Digital Repositories Roadmap. This was published by Eduserve and UKOLN in July last year, with funding from JISC. From publishers’ perspectives, the parts about open access will be of particular interest:

The vision for 2010 refers to the wish that a “high percentage of newly published scholarly outputs [be] made on available on terms of open access” and speaks of “a growing recognition of the benefits of making academic content more available”. The question now, as far as these goals are concerned, said Andy Powell, is increasingly “not if, but when…” The situation now might therefore require us to set a more ambitious target than that of a “high percentage”, he said.

Andy Powell’s slides are available in full on Slideshare and are worth reviewing. Apart from the open access issues, there are interesting issues arising with geospatial data and with regard to learning objects and research data.

Another plenary keynote was given by Professor Drummond Bone, Vice Chancellor of the University of Liverpool and President of Universities UK (Powerpoint slides). Universities UK was:

“firmly behind” JISC’s approach to the development of open access repositories, suggesting that repositories were “vital to universities’ economies and to the UK economy as a whole.”

Although Universities UK has recently produced a Policy Brief on open access (I blogged about this a few days ago here) the presentation is much broader (although it opens with a slide on OA), covering efficiencies in managing academic assets, data-driven science, lifelong learning and preservation.

The conference was also notable for the launch of The Depot. This will have two main services:

1. a re-direct service, with the Depot acting as a gateway, especially to repositories at UK universities (institutional repositories)
2. a deposit service for e-prints, with the Depot acting as a national repository for researchers not yet having an institutional repository in which to deposit their papers, articles, and book chapters (e-prints).

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Universities UK Policy Briefing – Publishing research results: the challenge of open access

Universities UK – the representative body for the executive heads of UK universities and is recognised as the umbrella group for the university sector – has published a Policy Briefing entitled Publishing research results: the challenge of open access.

It has not attracted much comment, perhaps because it is a surprisingly unbalanced and partial review. It ignores completely, for example, two reports (one written by myself, and the other by Chris Beckett and colleagues at Scholarly Information Strategies) which presented studies into the potential impact of self-archiving on journal subscriptions.

The Briefing focusses primarily on promoting the idea of universities establishing preprint servers to support author self-archiving. It quotes low costs for this, which apparently date from 2004, but makes no mention of later studies such as the Association of Research Libraries survey which showed average costs were much higher. The authors also fail to discuss in any detail the key problem of persuading authors to use repositories even when they exist, beyond blithely noting that this would

require a change in culture and the prospect of incentives. Action would be required by government and research funders, but universities would also have a key role to play in advocating the use of repositories.

Similarly, the authors cite a 2004 (non-peer-reviewed) paper supporting the proposition that open access articles receive increased citations, without mentioning a number of subsequent studies that have cast doubt on the explanation of open access as the cause of increased citations (as opposed to a quality bias, for instance).

And although it has only just appeared, there is little reference to recent material. Overall, beta-minus for Universities UK.

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Peter Suber’s Open Access predictions for 2007

Peter Suber has published his annual predictions for all things Open Access-related in the December Open Access Newsletter. His main predictions in outline:

  • more Open Access policies from funders and universities
  • institutional repositories will continue to spread
  • funding agencies with weak OA policies will come under pressure to tighten them
  • the key issue for funder mandates will be the length of the embargo
  • publishers that are not already “Green” (i.e. allow authors to post versions of their accepted articles) will come under pressure to become so
  • more publishers will adopt hybrid OA policies
  • book publishers will come to see that free online full-text *reading* will increase net sales

There are also links to the previous years’ predictions, so you can check out his track record: a quick look shows he’s much more right than wrong.

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